write_newick_file

Write a text file containing a phylogenetic tree in the Newick format
expected by BioGeoBEARS

Extracts colonisation and branching times of island
species to be used for analysis in the R package 'DAISIE'. It uses
phylogenetic and endemicity data to extract the separate island colonists
and store them.

Joshua W. Lambert

DAISIEprep

Extracts Phylogenetic Island Community Data from Phylogenetic
Trees

Luis Valente

Pedro Santos Neves

Lizzie Roeble

Theo Pannetier

write_newick_file function

<dl><dt>phylod</dt>
<dd>A <code>phylo4d</code> object from the package <code>phylobase</code> containing
phylogenetic and endemicity data for each species.</dd>
<dt>path_to_phylo</dt>
<dd>string specifying the path and name to write the file to.</dd></dl>

Arguments

Write tree input file for BioGeoBEARS — write_newick_file

<dl>

<dt>phylod</dt>
<dd>A <code>phylo4d</code> object from the package <code>phylobase</code> containing
phylogenetic and endemicity data for each species.</dd>


<dt>path_to_phylo</dt>
<dd>string specifying the path and name to write the file to.</dd>

</dl>

write_newick_file: Write tree input file for BioGeoBEARS

Description

Usage

Value

Arguments