write_phylip_biogeo_file

Write a text file containing occurrence data for all tips in the PHYLIP
format expected by BioGeoBEARS

Extracts colonisation and branching times of island
species to be used for analysis in the R package 'DAISIE'. It uses
phylogenetic and endemicity data to extract the separate island colonists
and store them.

Joshua W. Lambert

DAISIEprep

Extracts Phylogenetic Island Community Data from Phylogenetic
Trees

Luis Valente

Pedro Santos Neves

Lizzie Roeble

Theo Pannetier

write_phylip_biogeo_file function

<dl><dt>phylod</dt>
<dd>A <code>phylo4d</code> object from the package <code>phylobase</code> containing
phylogenetic and endemicity data for each species.</dd>
<dt>path_to_biogeo</dt>
<dd>string specifying the path and name to write the file
to.</dd></dl>

Arguments

Write biogeography input file for BioGeoBEARS — write_phylip_biogeo_file

<dl>

<dt>phylod</dt>
<dd>A <code>phylo4d</code> object from the package <code>phylobase</code> containing
phylogenetic and endemicity data for each species.</dd>


<dt>path_to_biogeo</dt>
<dd>string specifying the path and name to write the file
to.</dd>

</dl>

write_phylip_biogeo_file: Write biogeography input file for BioGeoBEARS

Description

Usage

Value

Arguments