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DAMOCLES (version 1.1)

Dynamic Assembly Model of Colonization, Local Extinction and Speciation

Description

Simulates and computes (maximum) likelihood of a dynamical model of community assembly that takes into account phylogenetic history.

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Version

Install

install.packages('DAMOCLES')

Monthly Downloads

223

Version

1.1

License

GPL-2

Maintainer

Rampal Etienne

Last Published

March 5th, 2015

Functions in DAMOCLES (1.1)

DAMOCLES_ML

Maximization of the loglikelihood under the DAMOCLES model
DAMOCLES-package

Dynamic Assembly Model Of Colonization, Local Extinction and Speciation
NWPrimates_data

Dated phylogenetic tree of the New World Primates in nexus format and presence-absence matrix for species in Manu
DAMOCLES-internal

Internal DAMOCLES Functions
DAMOCLES_sim

Simulating DAMOCLES
DAMOCLES_bootstrap

Phylogenetic community structure hypothesis test
DAMOCLES_loglik

Likelihood for DAMOCLES model