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DAMOCLES (version 1.1)
Dynamic Assembly Model of Colonization, Local Extinction and Speciation
Description
Simulates and computes (maximum) likelihood of a dynamical model of community assembly that takes into account phylogenetic history.
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Install
install.packages('DAMOCLES')
Monthly Downloads
214
Version
1.1
License
GPL-2
Maintainer
Rampal Etienne
Last Published
March 5th, 2015
Functions in DAMOCLES (1.1)
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DAMOCLES_ML
Maximization of the loglikelihood under the DAMOCLES model
DAMOCLES-package
Dynamic Assembly Model Of Colonization, Local Extinction and Speciation
NWPrimates_data
Dated phylogenetic tree of the New World Primates in nexus format and presence-absence matrix for species in Manu
DAMOCLES-internal
Internal DAMOCLES Functions
DAMOCLES_sim
Simulating DAMOCLES
DAMOCLES_bootstrap
Phylogenetic community structure hypothesis test
DAMOCLES_loglik
Likelihood for DAMOCLES model