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DAVIDQuery (version 1.32.0)

Retrieval from the DAVID bioinformatics data resource into R

Description

Tools to retrieve data from DAVID, the Database for Annotation, Visualization and Integrated Discovery

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Version

Version

1.32.0

License

GPL-2

Maintainer

Roger Day

Last Published

February 15th, 2017

Functions in DAVIDQuery (1.32.0)

DAVIDQuery-package

Retrieval from DAVID bioinformatics data resource.
DAVIDQuery

DAVIDQuery
requestIDConversion

Request a conversion for a previously uploaded ID List...
testGene2Gene

Test DAVID gene2gene tool
uniprotToAffy

Obtain Affymetrix probeset IDs for given Uniprot IDs.
uploadIDList

Upload an ID list to the DAVID query system...
catalogDAVIDResultsByTool

Create a catalog of types of DAVID results.
convertIDList

Retrieves conversions from one DAVID ID type in the input ID list to a different...
formatDAVIDResult

Format the character table returned by DAVID.
getAffyChipTypes

Retrieve all Affymetrix array type available from DAVID database.
findInBrackets

Extract the substring(s) between the left and right brackets...
DAVIDURLBase

Base URL for the DAVID database.
getHTMLChoices

Get (name,value) pairs from the HTML page selection box...
getIdConversionChoices

Retrieve all possible values defining the type of the submitted ID list as well as...
idExampleList

idExampleList
removeHTMLComments

Remove HTML comments from character string representing the HTML page...
affyToUniprot

Obtain Affymetrix probeset IDs for given Uniprot IDs.
bracketedStrings

Extract bracketed substrings.
getAffyProbesetList

Retrieve Affy probeset IDs from DAVID.
getAnnotationChoices

Retrieve all possible annotation values used in the annotation report tool...
DAVIDToolChoices

Choices for the DAVID query parameters
DAVIDQueryLoop

Access DAVID multiple times.