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DBGSA (version 1.0)

methods of distance-based gene set functional enrichment analysis

Description

This package provides methods and examples to support a method of disease-based Gene Set Functional Enrichment Analysis (GSFEA).

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Version

Install

install.packages('DBGSA')

Monthly Downloads

16

Version

1.0

License

GPL-3

Maintainer

Li Jin

Last Published

May 12th, 2011

Functions in DBGSA (1.0)

functionall

P values of distance-based gene set enrichment analysis
b1

Gene set function expression profile
valuep

function which computes p values from different phenotypes by distance matrix
distable

function to compute the specific distances between different phenotypes
afExp

Gene expression profile
distance

distances between case and control group
avelinkdis

Computing the distance by group average method
DBGSA-package

methods of distance-based gene set functional enrichment analysis
randdis

Randomly generating some gene expression profiles by gene resampling
centdis

Computing the distance by gravity method
rand

distances of gene expression obtained by gene resampling