DBGSA-package: methods of distance-based gene set functional enrichment analysis
Description
DBGSA package provides a new method to evaluate the possiblities of the enrichment between different phenotypes. DBGSA is a novel distance-based gene set enrichment analysis method. We consider that, the distance between 2 groups with different phenotype by focusing on the gene expression should be larger, if a certain gene functional set was significantly associated with a particular phenotype.
Arguments
Details
Package:
DBGSA
Type:
Package
Version:
1.1
Depends:
R(>=2.12.2),methods,fdrtool
Suggest:
ALL
Date:
2011-05-17
License:
GPL-3
LazyLoad:
yes
BiocViews:
bioinformatics
References
Lu Tian, Steven A. Greenberg, Sek Won Kong, Josiah Altschuler,Discovering statistically significant pathways in expression profiling studies, PNAS 2005 102;13544-13549