WH_train_fit

Train weights for WH using the given data, and fit the distance matrix for a input sequence.

R codes for distance based cell lineage reconstruction. Our methods won both sub-challenges 2 and 3 of the Allen Institute Cell Lineage Reconstruction DREAM Challenge in 2020.
References: Gong et al. (2021) <doi:10.1016/j.cels.2021.05.008>, Gong et al. (2022) <doi:10.1186/s12859-022-04633-x>.

Il-Youp Kwak

DCLEAR

Distance Based Cell Lineage Reconstruction

Wuming Gong

WH_train_fit function

<dl><dt>x</dt>
<dd>input data in phyDat format</dd>
<dt>X</dt>
<dd>a list of k number of input data, X[[1]] ... X[[k]]. The ith data have sequence information as phyDat format in X[[i]][[1]], and tree information in X[[i]][[2]] as phylo format.</dd></dl>

Arguments

Author

Train weights for WH, and output distance object — WH_train_fit

<dl>

<dt>x</dt>
<dd>input data in phyDat format</dd>


<dt>X</dt>
<dd>a list of k number of input data, X[[1]] ... X[[k]]. The ith data have sequence information as phyDat format in X[[i]][[1]], and tree information in X[[i]][[2]] as phylo format.</dd>

</dl>

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WH_train_fit: Train weights for WH, and output distance object

Description

Usage

Value

Arguments

Author