as_lineage_tree,phyDat,phylo,lineage_tree_config-method

Convert a phylo object and a phyDat object to a lineage_tree object

R codes for distance based cell lineage reconstruction. Our methods won both sub-challenges 2 and 3 of the Allen Institute Cell Lineage Reconstruction DREAM Challenge in 2020.
References: Gong et al. (2021) <doi:10.1016/j.cels.2021.05.008>, Gong et al. (2022) <doi:10.1186/s12859-022-04633-x>.

Il-Youp Kwak

DCLEAR

Distance Based Cell Lineage Reconstruction

Wuming Gong

as_lineage_tree,phyDat,phylo,lineage_tree_config-method function

<dl><dt>x</dt>
<dd>a phyDat object</dd>
<dt>y</dt>
<dd>a phylo object</dd>
<dt>config</dt>
<dd>a lineage_tree_config object</dd>
<dt>...</dt>
<dd>additional parameters</dd></dl>

Arguments

as_lineage_tree — as_lineage_tree,phyDat,phylo,lineage_tree_config-method

<dl>

<dt>x</dt>
<dd>a phyDat object</dd>


<dt>y</dt>
<dd>a phylo object</dd>


<dt>config</dt>
<dd>a lineage_tree_config object</dd>


<dt>...</dt>
<dd>additional parameters</dd>

</dl>

as_lineage_tree,phyDat,phylo,lineage_tree_config-method: as_lineage_tree

Description

Usage

Value

Arguments