sample_mutation_outcome

R codes for distance based cell lineage reconstruction. Our methods won both sub-challenges 2 and 3 of the Allen Institute Cell Lineage Reconstruction DREAM Challenge in 2020.
References: Gong et al. (2021) <doi:10.1016/j.cels.2021.05.008>, Gong et al. (2022) <doi:10.1186/s12859-022-04633-x>.

Il-Youp Kwak

DCLEAR

Distance Based Cell Lineage Reconstruction

Wuming Gong

sample_mutation_outcome function

<dl><dt>x</dt>
<dd>an igraph object</dd>
<dt>mp</dt>
<dd>a mutation site matrix</dd>
<dt>config</dt>
<dd>a lineage_tree_config object</dd></dl>

Arguments

sample_mutation_outcome — sample_mutation_outcome

<dl>

<dt>x</dt>
<dd>an igraph object</dd>


<dt>mp</dt>
<dd>a mutation site matrix</dd>


<dt>config</dt>
<dd>a lineage_tree_config object</dd>

</dl>

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sample_mutation_outcome: sample_mutation_outcome

Description

Usage

Value

Arguments