sample_mutation_site

R codes for distance based cell lineage reconstruction. Our methods won both sub-challenges 2 and 3 of the Allen Institute Cell Lineage Reconstruction DREAM Challenge in 2020.
References: Gong et al. (2021) <doi:10.1016/j.cels.2021.05.008>, Gong et al. (2022) <doi:10.1186/s12859-022-04633-x>.

Il-Youp Kwak

DCLEAR

Distance Based Cell Lineage Reconstruction

Wuming Gong

sample_mutation_site function

<dl><dt>tree</dt>
<dd>a data frame</dd>
<dt>config</dt>
<dd>a lineage_tree_config object</dd></dl>

Arguments

sample_mutation_site — sample_mutation_site

<dl>

<dt>tree</dt>
<dd>a data frame</dd>


<dt>config</dt>
<dd>a lineage_tree_config object</dd>

</dl>

sample_mutation_site: sample_mutation_site

Description

Usage

Value

Arguments