sample_outcome_prob

Sampling outcome probability based on a gamma distribution

R codes for distance based cell lineage reconstruction. Our methods won both sub-challenges 2 and 3 of the Allen Institute Cell Lineage Reconstruction DREAM Challenge in 2020.
References: Gong et al. (2021) <doi:10.1016/j.cels.2021.05.008>, Gong et al. (2022) <doi:10.1186/s12859-022-04633-x>.

Il-Youp Kwak

DCLEAR

Distance Based Cell Lineage Reconstruction

Wuming Gong

sample_outcome_prob function

<dl><dt>config</dt>
<dd>a lineage_tree_config object</dd>
<dt>num_states</dt>
<dd>number of states used in simulation.</dd>
<dt>shape</dt>
<dd>shape parameter in gamma distribution</dd>
<dt>scale</dt>
<dd>scale parameter in gamma distribution</dd></dl>

Arguments

Author

sample_outcome_prob — sample_outcome_prob

<dl>

<dt>config</dt>
<dd>a lineage_tree_config object</dd>


<dt>num_states</dt>
<dd>number of states used in simulation.</dd>


<dt>shape</dt>
<dd>shape parameter in gamma distribution</dd>


<dt>scale</dt>
<dd>scale parameter in gamma distribution</dd>

</dl>

sample_outcome_prob: sample_outcome_prob

Description

Usage

Value

Arguments

Author