simulate

R codes for distance based cell lineage reconstruction. Our methods won both sub-challenges 2 and 3 of the Allen Institute Cell Lineage Reconstruction DREAM Challenge in 2020.
References: Gong et al. (2021) <doi:10.1016/j.cels.2021.05.008>, Gong et al. (2022) <doi:10.1186/s12859-022-04633-x>.

Il-Youp Kwak

DCLEAR

Distance Based Cell Lineage Reconstruction

Wuming Gong

simulate function

<dl><dt>config</dt>
<dd>a lineage_tree_config object</dd>
<dt>x</dt>
<dd>a sequence object</dd>
<dt>...</dt>
<dd>additional parameters</dd></dl>

Arguments

Generic function for simulate — simulate

<dl>

<dt>config</dt>
<dd>a lineage_tree_config object</dd>


<dt>x</dt>
<dd>a sequence object</dd>


<dt>...</dt>
<dd>additional parameters</dd>

</dl>

simulate: Generic function for simulate

Description

Usage

Arguments