substr_kmer

R codes for distance based cell lineage reconstruction. Our methods won both sub-challenges 2 and 3 of the Allen Institute Cell Lineage Reconstruction DREAM Challenge in 2020.
References: Gong et al. (2021) <doi:10.1016/j.cels.2021.05.008>, Gong et al. (2022) <doi:10.1186/s12859-022-04633-x>.

Il-Youp Kwak

DCLEAR

Distance Based Cell Lineage Reconstruction

Wuming Gong

substr_kmer function

<dl><dt>x</dt>
<dd>a kmer object</dd>
<dt>...</dt>
<dd>additional parameters</dd></dl>

Arguments

Generic function for substr_kmer — substr_kmer

<dl>

<dt>x</dt>
<dd>a kmer object</dd>


<dt>...</dt>
<dd>additional parameters</dd>

</dl>

substr_kmer: Generic function for substr_kmer

Description

Usage

Arguments