substr_kmer,kmer_summary-method

Summarize the short k-mer summary from the long k-mer summary

R codes for distance based cell lineage reconstruction. Our methods won both sub-challenges 2 and 3 of the Allen Institute Cell Lineage Reconstruction DREAM Challenge in 2020.
References: Gong et al. (2021) <doi:10.1016/j.cels.2021.05.008>, Gong et al. (2022) <doi:10.1186/s12859-022-04633-x>.

Il-Youp Kwak

DCLEAR

Distance Based Cell Lineage Reconstruction

Wuming Gong

substr_kmer,kmer_summary-method function

<dl><dt>x</dt>
<dd>a kmer_summary object</dd>
<dt>k</dt>
<dd>k-mer length(default: 2)</dd></dl>

Arguments

Author

Subseting a kmer_summary object — substr_kmer,kmer_summary-method

<dl>

<dt>x</dt>
<dd>a kmer_summary object</dd>


<dt>k</dt>
<dd>k-mer length(default: 2)</dd>

</dl>

substr_kmer,kmer_summary-method: Subseting a kmer_summary object

Description

Usage

Value

Arguments

Author