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DCODE (version 1.0)

List Linear n-Peptide Constraints for Overlapping Protein Regions

Description

Traversal graph algorithm for listing linear n-peptide constraints for overlapping protein regions. (Lebre and Gascuel, The combinatorics of overlapping genes, freely available from arXiv at : http://arxiv.org/abs/1602.04971).

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Version

Install

install.packages('DCODE')

Monthly Downloads

57

Version

1.0

License

GPL (>= 2)

Maintainer

Sophie Lebre

Last Published

March 10th, 2016

Functions in DCODE (1.0)

DCODE-internal

Internal DCODE Functions
build_data

Function to build the elements aaList, geneticCode, peptideList, used by function getConstraint.
getConstraint

Function giving the linear constraint associated with the chosen peptide and overlapping frame.
DCODE-package

List Linear n-Peptide Constraints for Overlapping Protein Regions