TSS_galonska


This data contains mouse mm9 TSS close to called peak regions for H3Kme3 
from Galonksa
et al. The original peak lists are from are from GEO (GSE56312) and have been
merged into a common peaklist and then annotated to the closest mm9 TSS using
<a rd-options="ChIPpeakAnno" href="/link/annotatePeakInBatch?package=DChIPRep&version=1.2.3&to=ChIPpeakAnno" data-mini-rdoc="ChIPpeakAnno::annotatePeakInBatch">annotatePeakInBatch</a>.


datasets

The DChIPRep package implements a methodology to assess
differences between chromatin modification profiles in
replicated ChIP-Seq studies as described in Chabbert et. al -
http://www.dx.doi.org/10.15252/msb.20145776. A detailed description of
the method is given in the software paper at https://doi.org/10.7717/peerj.1981

Bernd Klaus

DChIPRep

DChIPRep - Analysis of chromatin modification ChIP-Seq data with
replication

TSS_galonska function

an annoGR object from the package <code>ChIPpeakAnno</code>.

Format

This data contains mouse mm9 TSS close to called peak regions for H3Kme3 
from Galonksa
et al. The original peak lists are from are from GEO (GSE56312) and have been
merged into a common peaklist and then annotated to the closest mm9 TSS using
<a href="annotatePeakInBatch" rd-options="ChIPpeakAnno">annotatePeakInBatch</a>.

TSS_galonska: TSS around called peak regions from Galonska et. al.

Description

Usage

Arguments

Value

Format

See Also