DClusterm v1.0-1

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Model-Based Detection of Disease Clusters

Model-based methods for the detection of disease clusters using GLMs, GLMMs and zero-inflated models. These methods are described in 'V. G<c3><b3>mez-Rubio et al.' (2019) <doi:10.18637/jss.v090.i14> and 'V. G<c3><b3>mez-Rubio et al.' (2018) <doi:10.1007/978-3-030-01584-8_1>.

Functions in DClusterm

Name Description
get.stclusters Gets areas in a spatio-temporal cluster
get.allknclusters Extract indices of the areas in the clusters detected
glmAndZIP.iscluster Obtains the cluster with the maximum log-likelihood ratio or minimum DIC of all the clusters with the same center and start and end dates.
knbinary Constructs data frame with clusters in binary format.
SetVbleCluster Constructs a variable that indicates the locations and times that pertain to a cluster.
slimknclusters Remove overlapping clusters
mergeknclusters Merges clusters so that they are identifed as levels of a factor.
brainNM Brain cancer in New Mexico, USA, 1973-1991.
CalcStatsAllClusters Obtains the clusters with the maximum log-likelihood ratio or minimum DIC for each center and start and end dates.
CalcStatClusterGivenCenter Calls the function to obtain the cluster with the maximum log-likelihood ratio or minimum DIC of all the clusters with the same center and start and end dates.
computeprob Computes the probability that a model parameter is <=k from inla marginals
SelectStatsAllClustersNoOverlap Removes the overlapping clusters.
CreateGridDClusterm Creates grid over the study area.
NY8 Leukemia in an eight-county region of upstate New York, 1978-1982.
DetectClustersModel Detects clusters and computes their significance.
Navarre Brain cancer in males in Navarre, Spain, 1988-1994.
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Vignettes of DClusterm

Name
DClusterm.Rnw
DClusterm.bib
Makefile
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Details

Type Package
Encoding UTF-8
Date 2020-02-21
Additional_repositories https://inla.r-inla-download.org/R/stable/
License GPL-3
LazyLoad yes
LazyData yes
Collate 'Functions1.R' 'Functions2.R' 'glm.iscluster.R' 'knutils.R'
RoxygenNote 7.0.2
NeedsCompilation no
Packaged 2020-02-21 13:23:06 UTC; virgil
Repository CRAN
Date/Publication 2020-02-25 13:10:06 UTC

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