brts2phylo

times

When root is FALSE, the largest branching time will be assumed to be
the crown age. When root is TRUE, it will be the stem age.

root

Tip labels. If set to NULL, the labels will be t1, t2, etc.

tip.label

Converting a set of branching times to a phylogeny

models

Implements maximum likelihood and bootstrap methods based on
the diversity-dependent birth-death process to test whether
speciation or extinction are diversity-dependent, under various
models including various types of key innovations.
See Etienne et al. 2012, Proc. Roy. Soc. B 279: 1300-1309,
<DOI:10.1098/rspb.2011.1439>,
Etienne & Haegeman 2012, Am. Nat. 180: E75-E89,
<DOI:10.1086/667574> and
Etienne et al. 2016. Meth. Ecol. Evol. 7: 1092-1099,
<DOI:10.1111/2041-210X.12565>.
Also contains functions to simulate the diversity-dependent
process.

Rampal Etienne

Diversity-Dependent Diversification

brts2phylo function

Function to convert a set of branching times into a
phylogeny with random topology
This code is taken from the package TESS by Sebastian Hoehna, where the function
is called tess.create.phylo — brts2phylo

Function to convert a set of branching times into a
phylogeny with random topology
This code is taken from the package TESS by Sebastian Hoehna, where the function
is called tess.create.phylo

brts2phylo: Function to convert a set of branching times into a phylogeny with random topology This code is taken from the package TESS by Sebastian Hoehna, where the function is called tess.create.phylo

Description

Usage

Arguments

Value

References