Implements maximum likelihood and bootstrap methods based on the diversity-dependent birth-death process to test whether speciation or extinction are diversity-dependent, under various models including various types of key innovations. See Etienne et al. 2012, Proc. Roy. Soc. B 279: 1300-1309, tools:::Rd_expr_doi("10.1098/rspb.2011.1439"), Etienne & Haegeman 2012, Am. Nat. 180: E75-E89, tools:::Rd_expr_doi("10.1086/667574"), Etienne et al. 2016. Meth. Ecol. Evol. 7: 1092-1099, tools:::Rd_expr_doi("10.1111/2041-210X.12565") and Laudanno et al. 2021. Syst. Biol. 70: 389–407, tools:::Rd_expr_doi("10.1093/sysbio/syaa048"). Also contains functions to simulate the diversity-dependent process.
Maintainer: Rampal S. Etienne r.s.etienne@rug.nl (ORCID)
Authors:
Bart Haegeman bart.haegeman@sete.cnrs.fr (ORCID)
Other contributors:
Hanno Hildenbrandt h.hildenbrandt@rug.nl (ORCID) [contributor]
Giovanni Laudanno glaudanno@gmail.com (ORCID) [contributor]