DDPNA (version 0.4.1)

DEPsets: DEPsets

Description

extract two or more IDsets interesection set and complementary set and define the colors.

Usage

DEPsets(datalist, colors = c("red", "green", "blue"))

Value

a list contains interesection set and complementary set information and colors.

gene.set

a list of each set ID information.

color.code

the colors of each set

Arguments

datalist

a list contains more than two ID sets.

colors

define each ID sets color.

Author

Kefu Liu

Examples

data(net)
data(imputedData)
Module <- Module_inf(net, imputedData$inf)
group <- gsub("[0-9]+","", colnames(imputedData$intensity))
data <- imputedData
data$inf <- data$inf[1:100,]
data$intensity <- data$intensity[1:100,]
stat <- dataStatInf(data, group, meanmethod = "median",
                    T.test = "pairwise", Aadj = "fdr",
                    Tadj = "fdr", cutoff = FALSE)
stat <- rename_dupnewID(stat, Module, DEPfromMod = TRUE)
stat1 <- stat$new.ID[stat$ad > 1]
stat2 <- stat$new.ID[stat$asym > 1]
datalist <- list(stat1 = stat1, stat2 = stat2)
sets <- DEPsets(datalist)