Module_inf

module and protein information match

Functions designed to connect disease-related differential proteins and
co-expression network. It provides the basic statics analysis included t test, ANOVA analysis.
The network construction is not offered by the package, you can used 'WGCNA' package which you
can learn in Peter et al. (2008) <doi:10.1186/1471-2105-9-559>. It also provides module analysis
included PCA analysis, two enrichment analysis, Planner maximally filtered graph extraction and
hub analysis.

Kefu Liu

DDPNA

Disease-Drived Differential Proteins Co-Expression Network
Analysis

Module_inf function

<dl> <dt>net</dt>
<dd>module network which is calculated in WGCNA package.</dd> <dt>inf</dt>
<dd>proteome quantification data information which contains protein IDs.</dd> <dt>inftype</dt>
<dd>data information type.
 This must be (an abbreviation of) one of the strings "<code>Convert</code>","<code>MaxQ</code>","<code>none</code>".
 "<code>Convert</code>" means protein ID is converted by <code>MaxquantDataconvert</code> function.
 "<code>MaxQ</code>" means original Maxquant software quantification data information.</dd> <dt>IDname</dt>
<dd>IDname is "<code>inf</code>" column names which will extract.</dd> <dt>...</dt>
<dd>other argument.</dd></dl>

Arguments

Author

Module and protein information. — Module_inf

<dl>

 <dt>net</dt>
<dd>module network which is calculated in WGCNA package.</dd>

 <dt>inf</dt>
<dd>proteome quantification data information which contains protein IDs.</dd>

 <dt>inftype</dt>
<dd>data information type.
 This must be (an abbreviation of) one of the strings "<code>Convert</code>","<code>MaxQ</code>","<code>none</code>".
 "<code>Convert</code>" means protein ID is converted by <code>MaxquantDataconvert</code> function.
 "<code>MaxQ</code>" means original Maxquant software quantification data information.</dd>

 <dt>IDname</dt>
<dd>IDname is "<code>inf</code>" column names which will extract.</dd>

 <dt>...</dt>
<dd>other argument.</dd>

</dl>

Module_inf: Module and protein information.

Description

Usage

Arguments

Author

Examples