sqdist_R

calculate the square distance between a, b

Provides an implementation of the framework of reversed graph embedding (RGE) which projects data into a reduced dimensional space while constructs a principal tree which passes through the middle of the data simultaneously. DDRTree shows superiority to alternatives (Wishbone, DPT) for inferring the ordering as well as the intrinsic structure of the single cell genomics data. In general, it could be used to reconstruct the temporal progression as well as bifurcation structure of any datatype.

Brent Ewing

DDRTree

Learning Principal Graphs with DDRTree

Xiaojie Qiu

Cole Trapnell

Qi Mao

Li Wang

sqdist_R function

<dl><dt>a</dt>
<dd>a matrix with \(D \times N\) dimension</dd>
<dt>b</dt>
<dd>a matrix with \(D \times N\) dimension</dd></dl>

Arguments

calculate the square distance between a, b — sqdist_R

<dl>

<dt>a</dt>
<dd>a matrix with \(D \times N\) dimension</dd>


<dt>b</dt>
<dd>a matrix with \(D \times N\) dimension</dd>

</dl>

sqdist_R: calculate the square distance between a, b

Description

Usage

Value

Arguments