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Installation

The package is distributed as part of the Bioconductor project. To install this package, start R and enter:

source("https://bioconductor.org/biocLite.R")
biocLite("DEFormats")

Documentation

For an overview of the package functionality see the vignette.

Once you install the package, you can access individual man pages by a call to, e.g., ?DEFormats.

Bug reports and feature requests

Bug reports, feature requests, or any other issues with the package should be reported at https://github.com/aoles/DEFormats/issues.

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Version

Version

1.0.2

License

GPL-3

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Maintainer

Andrzej Ole

Last Published

February 15th, 2017

Functions in DEFormats (1.0.2)

simulateNormFactors

Simulate Normalization Factors
as.DESeqDataSet

Convert to DESeqDataSet
DGEList

DGEList Constructor Generic
simulateRnaSeqData

Example counts table of RNA-seq data
as.DGEList

Convert to DGEList
DEFormats

Convert Between Differential Gene Expression Data Formats