annLoi2008

This data set gives NCBI, Hugo and alternative gene symbols
  along with the cytoband and description for the 227 genes used in the
  DEGraph package vignette. This comes from the 15737 gene, 255 patient
  dataset of Loi et al. (2008) which was used to study resistance to
  tamoxifen treatment in hormone-dependent breast cancer.  

datasets

DEGraph implements recent hypothesis testing methods which
directly assess whether a particular gene network is
differentially expressed between two conditions. This is to be
contrasted with the more classical two-step approaches which
first test individual genes, then test gene sets for enrichment
in differentially expressed genes. These recent methods take
into account the topology of the network to yield more powerful
detection procedures. DEGraph provides methods to easily test
all KEGG pathways for differential expression on any gene
expression data set and tools to visualize the results.

Laurent Jacob

DEGraph

Two-sample tests on a graph

annLoi2008 function

Format

Loi et al.,
  <em>Predicting prognosis using molecular profiling in estrogen
  receptor-positive breast cancer treated with tamoxifen.</em>
  BMC Genomics, 9(1):239, 2008.

Source

This data set gives NCBI, Hugo and alternative gene symbols
  along with the cytoband and description for the 227 genes used in the
  DEGraph package vignette. This comes from the 15737 gene, 255 patient
  dataset of Loi et al. (2008) which was used to study resistance to
  tamoxifen treatment in hormone-dependent breast cancer.

annLoi2008: Annotation data used in the DEGraph package vignette

Description

Usage

Arguments

Format

Source

References

Examples