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DEGseq (version 1.26.0)
Identify Differentially Expressed Genes from RNA-seq data
Description
DEGseq is an R package to identify differentially expressed genes from RNA-Seq data.
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Version
Version
1.26.0
1.24.0
1.22.0
1.20.0
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Version
1.26.0
License
LGPL (>=2)
Maintainer
Likun Wang
Last Published
January 1st, 1970
Functions in DEGseq (1.26.0)
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samWrapper
samWrapper: A Wrapper (with some modification) of the functions in the package samr to identify differentially expressed genes for the RNA-seq data from two groups of paired or unpaired samples.
GeneExpExample1000
GeneExpExample1000
DEGseq
DEGseq: Identify Differentially Expressed Genes from RNA-seq data
DEGexp2
DEGexp2: Identifying Differentially Expressed Genes from gene expression data
kidneyChr21Bowtie
kidneyChr21Bowtie
GeneExpExample5000
GeneExpExample5000
kidneyChr21.bed
kidneyChr21.bed
refFlatChr21
refFlatChr21
liverChr21Bowtie
liverChr21Bowtie
getGeneExp
getGeneExp: Count the number of reads and calculate the RPKM for each gene
readGeneExp
readGeneExp: read gene expression values to a matrix
DEGexp
DEGexp: Identifying Differentially Expressed Genes from gene expression data
liverChr21.bed
liverChr21.bed