DEPONS2R (version 1.2.2)

read.DeponsBlockdyn: Reading simulated population count for blocks

Description

Function for reading DEPONS simulation output with number of animals per block for each time step.

Usage

read.DeponsBlockdyn(
  fname,
  title = "NA",
  landscape = "NA",
  simtime = "NA",
  startday = "NA"
)

Value

DeponsBlockdyn object

Arguments

fname

Name of the file (character) that contains movement data generated by DEPONS. The name includes the path to the directory if this is not the current working directory.

title

Optional character string giving name of simulation

landscape

The landscape used in the simulation

simtime

Optional text string with date of simulation (format: yyyy-mm-dd). If not provided this is obtained from name of input file

startday

The start of the period that the simulation represents, i.e. the real-world equivalent of 'tick 1' (POSIXlt)

See Also

See DeponsBlockdyn-class for details on what is stored in the output object and read.DeponsParam for reading the parameters used in the simulation.

Examples

if (FALSE) {
# File loaded from default location
the.file <- "/Applications/DEPONS 2.1/DEPONS/PorpoisePerBlock.2020.Sep.02.20_24_17.csv"
file.exists(the.file)
porpoise.blockdyn <- read.DeponsBlockdyn(fname=the.file,
  title="Test simulation with two blocks", landscape="North Sea")
porpoise.blockdyn

# Get the latest simulation
the.file <- get.latest.sim(type="blockdyn", dir="/Applications/DEPONS 2.1/DEPONS")
owd <- getwd()
setwd("/Applications/DEPONS 2.1/DEPONS")
porpoise.blockdyn <- read.DeponsBlockdyn(fname=the.file)
setwd(owd)
}