makeExampleDESeqDataSet

the standard deviation for non-intercept betas, i.e. beta ~ N(0,betaSD)

betaSD

the mean of the intercept betas (log2 scale)

interceptMean

the standard deviation of the intercept betas (log2 scale)

interceptSD

a function specifying the relationship of the dispersions on
<code>2^trueIntercept</code>

dispMeanRel

sizeFactors


Constructs a simulated dataset of Negative Binomial data from
two conditions. By default, there are no fold changes between
the two conditions, but this can be adjusted with the <code>betaSD</code> argument.


Estimate variance-mean dependence in count data from
high-throughput sequencing assays and test for differential
expression based on a model using the negative binomial
distribution.

Michael Love

DESeq2

Differential gene expression analysis based on the negative
binomial distribution

makeExampleDESeqDataSet function

Constructs a simulated dataset of Negative Binomial data from
two conditions. By default, there are no fold changes between
the two conditions, but this can be adjusted with the <code>betaSD</code> argument.

makeExampleDESeqDataSet: Make a simulated DESeqDataSet

Description

Usage

Arguments

Value

Examples