DESeqTransform

DESeqTransform-class

SummarizedExperiment


This constructor function would not typically be used by "end users".
This simple class extends the SummarizedExperiment class of the GenomicRanges package.
It is used by <code><a rd-options="" href="/link/rlog?package=DESeq2&version=1.8.2" data-mini-rdoc="DESeq2::rlog">rlog</a></code> and
<code><a rd-options="" href="/link/varianceStabilizingTransformation?package=DESeq2&version=1.8.2" data-mini-rdoc="DESeq2::varianceStabilizingTransformation">varianceStabilizingTransformation</a></code>
to wrap up the results into a class for downstream methods,
such as <code><a rd-options="" href="/link/plotPCA?package=DESeq2&version=1.8.2" data-mini-rdoc="DESeq2::plotPCA">plotPCA</a></code>.


Estimate variance-mean dependence in count data from
high-throughput sequencing assays and test for differential
expression based on a model using the negative binomial
distribution.

Michael Love

DESeq2

Differential gene expression analysis based on the negative
binomial distribution

DESeqTransform-class function


This constructor function would not typically be used by "end users".
This simple class extends the SummarizedExperiment class of the GenomicRanges package.
It is used by <code><a rd-options='' href='rlog'>rlog</a></code> and
<code><a rd-options='' href='varianceStabilizingTransformation'>varianceStabilizingTransformation</a></code>
to wrap up the results into a class for downstream methods,
such as <code><a rd-options='' href='plotPCA'>plotPCA</a></code>.


DESeqTransform-class: DESeqTransform object and constructor

Description

Usage

Arguments

Value