plotJn

an output from <code><a rd-options="" href="/link/snowball?package=DESnowball&version=1.0" data-mini-rdoc="DESnowball::snowball">snowball</a></code>

the corresponding output from
  <code><a rd-options="" href="/link/select.features?package=DESnowball&version=1.0" data-mini-rdoc="DESnowball::select.features">select.features</a></code>

<code>pch</code> of the symbols for
  non-significant genes. See <code><a rd-options="" href="/link/par?package=DESnowball&version=1.0" data-mini-rdoc="DESnowball::par">par</a></code> for more
  details

pch.nonsig

<code>pch</code> of the symbols for significant
  genes.

pch.sig

a <code>logical</code> value, set to
  <code>TRUE</code> if the genes blow the median are to be
  highlighted

below.median

set the highlight color for genes above
  the median

col.above

set the highlight color for genes below
  the median

col.below


Plot the $J_n(x)$ values output from
<code><a rd-options="" href="/link/snowball?package=DESnowball&version=1.0" data-mini-rdoc="DESnowball::snowball">snowball</a></code>, with significant genes highlighted.
See references for more details.


This package implements a statistical data mining method to
compare whole genome gene expression profiles, with respect to the presence
of a recurrent genetic disturbance event, to identify the affected target
genes.

plotJn: Plot Jn values

Description

Usage

Arguments