DEXSeq

object

fullModel

reducedModel


     A "BiocParallelParam" instance. 
     See <code>?bplapply</code> for details.
  

BPPARAM


    A variable name contained in the sample data. The expression 
    values will be fitted to this variable using the the formula 
    " ~ sample + fitExpToVar * exon".
  

fitExpToVar


    Whether to print messages at each step
  

quiet


  This function is a wrapper that calls the necessary functions
  to perform a differential exon usage test in a single command.


The package is focused on finding differential exon usage
using RNA-seq exon counts between samples with different
experimental designs. It provides functions that allows the
user to make the necessary statistical tests based on a model
that uses the negative binomial distribution to estimate the
variance between biological replicates and generalized linear
models for testing. The package also provides functions for the
visualization and exploration of the results.

Alejandro Reyes

Inference of differential exon usage in RNA-Seq

DEXSeq function

A "BiocParallelParam" instance. 
     See <code>?bplapply</code> for details.

A variable name contained in the sample data. The expression 
    values will be fitted to this variable using the the formula 
    " ~ sample + fitExpToVar * exon".

This function is a wrapper that calls the necessary functions
  to perform a differential exon usage test in a single command.

DEXSeq: Performs the differential exon usage test in a single command

Description

Usage

Arguments

Value

Examples