DEXSeq: Performs the differential exon usage test in a single command
Description
This function is a wrapper that calls the necessary functions
to perform a differential exon usage test in a single command.
Usage
DEXSeq(object, fullModel=design(object), reducedModel = ~ sample + exon, BPPARAM=MulticoreParam(workers=1), fitExpToVar="condition", quiet=TRUE )
Arguments
object
An DEXSeqDataSet object.
fullModel
The full model formula
reducedModel
Null model formula.
BPPARAM
A "BiocParallelParam" instance.
See ?bplapply for details.
fitExpToVar
A variable name contained in the sample data. The expression
values will be fitted to this variable using the the formula
" ~ sample + fitExpToVar * exon".
quiet
Whether to print messages at each step
Value
A DEXSeqResults object.
Examples
Run this code ## Not run:
# data(pasillaDEXSeqDataSet, package="pasilla")
# dxr <- DEXSeq( dxd )
# ## End(Not run)
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