[,DEXSeqDataSet-method

[,DEXSeqDataSet,ANY-method

[,DEXSeqDataSet,ANY,ANY-method

[,DEXSeqDataSet,ANY,ANY,ANY-method

colData<-,DEXSeqDataSet,DataFrame-method

$<-,DEXSeqDataSet-method


        Indices specifying elements to extract.
    

 A symbol representing the name of a column of
       <code>colData</code>. 

name

An object of a class specified in the S4 method signature.

value


        Other arguments passed to lower functions
    


        Ignored for subsetting DEXSeqDataSet objects.
    

drop


  Subset and replacements of DEXSeqDataSet slots.


DEXSeqDataSet-methods

The package is focused on finding differential exon usage
using RNA-seq exon counts between samples with different
experimental designs. It provides functions that allows the
user to make the necessary statistical tests based on a model
that uses the negative binomial distribution to estimate the
variance between biological replicates and generalized linear
models for testing. The package also provides functions for the
visualization and exploration of the results.

Alejandro Reyes

DEXSeq

Inference of differential exon usage in RNA-Seq

DEXSeqDataSet-methods function

A symbol representing the name of a column of
       <code>colData</code>.

Other arguments passed to lower functions

Ignored for subsetting DEXSeqDataSet objects.

Subset and replacements of DEXSeqDataSet slots.

DEXSeqDataSet-methods: Subset and replacements of DEXSeqDataSet slots

Description

Usage

Arguments