DEXSeqResults

DEXSeqResults-class


        A <code>DEXSeqDataSet</code> object.
    

object


        Logical indicating whether independent filtering should be 
    	applied automatically. 
	

independentFiltering


        A vector of filter statistics over which the independent
        filtering will be optimized. The default is the normalized
        exon means.
	

filter


  The <code>DEXSeqResults</code> object is a subclass 
  of a <code>DataFrame</code>. It collects relevant 
  information from a <code>DEXSeqDataSet</code> object with
  the results generated from testing for differences
  in exon usage.


The package is focused on finding differential exon usage
using RNA-seq exon counts between samples with different
experimental designs. It provides functions that allows the
user to make the necessary statistical tests based on a model
that uses the negative binomial distribution to estimate the
variance between biological replicates and generalized linear
models for testing. The package also provides functions for the
visualization and exploration of the results.

Alejandro Reyes

DEXSeq

Inference of differential exon usage in RNA-Seq

DEXSeqResults-class function

Logical indicating whether independent filtering should be 
    	applied automatically.

A vector of filter statistics over which the independent
        filtering will be optimized. The default is the normalized
        exon means.

The <code>DEXSeqResults</code> object is a subclass 
  of a <code>DataFrame</code>. It collects relevant 
  information from a <code>DEXSeqDataSet</code> object with
  the results generated from testing for differences
  in exon usage.

DEXSeqResults-class: DEXSeqResults object

Description

Usage

Arguments

Value

Examples