counts

counts,DEXSeqResults-method

object

logical indicating whether or not to
  divide the counts by the size factors or normalization
  factors before returning (normalization factors always
  preempt size factors)

normalized


The counts slot holds the count data as a matrix of
non-negative integer count values, one row for each
observational unit (gene or the like), and one column for
each sample.


The package is focused on finding differential exon usage
using RNA-seq exon counts between samples with different
experimental designs. It provides functions that allows the
user to make the necessary statistical tests based on a model
that uses the negative binomial distribution to estimate the
variance between biological replicates and generalized linear
models for testing. The package also provides functions for the
visualization and exploration of the results.

Alejandro Reyes

DEXSeq

Inference of differential exon usage in RNA-Seq

counts function

The counts slot holds the count data as a matrix of
non-negative integer count values, one row for each
observational unit (gene or the like), and one column for
each sample.

counts: Accessors for the 'counts' slot of a DEXSeqResults object.

Description

Usage

Arguments

Value

Examples