featureCounts: Accessor functions for DEXSeqDataSet details
Description
Accessor functions of the DEXSeqDataSet object.
Usage
featureCounts(object, normalized=FALSE)
featureIDs( object ) featureIDs( object ) <- value
exonIDs( object ) exonIDs( object ) <- value
groupIDs( object ) groupIDs( object ) <- value
geneIDs( object ) geneIDs( object ) <- value
sampleAnnotation( object )
Arguments
object
An DEXSeqDataSet object.
value
A character vector to replace previous values.
normalized
Logical indicating whether or not to
divide the counts by the size factors or normalization
factors before returning (normalization factors always
preempt size factors)
Value
'featureCounts' access the counts per exonic region or
feature region names. 'featureIDs' and 'exonIDs' are accessor
functions for the exon bin or features identifiers.
'groupIDs' and 'geneIDs' are accessor functions for
the character vector grouping the features, for example exonIDs
from the same gene are grouped together by having the
same value in the geneIDs. 'sampleAnnotation' is an accessor
for the information from the samples.