perGeneQValue


    An <code>DEXSeqResults</code> object.
  

object

A character string indicating the name of the columns in
    <code>DEXSeqResults</code> from which to take the per-exon p-values.

Use the default value. This is for debugging only.

method


  The use case for this function is the following analysis: given
  per-exon p-values for null hypothesis H0, we can determine the number
  of genes in which at least for one exon H0 is rejected. What is the
  associated false disovery rate?


The package is focused on finding differential exon usage
using RNA-seq exon counts between samples with different
experimental designs. It provides functions that allows the
user to make the necessary statistical tests based on a model
that uses the negative binomial distribution to estimate the
variance between biological replicates and generalized linear
models for testing. The package also provides functions for the
visualization and exploration of the results.

Alejandro Reyes

DEXSeq

Inference of differential exon usage in RNA-Seq

perGeneQValue function

The use case for this function is the following analysis: given
  per-exon p-values for null hypothesis H0, we can determine the number
  of genes in which at least for one exon H0 is rejected. What is the
  associated false disovery rate?

perGeneQValue: Summarize per-exon p-values into per-gene q-values.

Description

Usage

Arguments

Value

Details

Examples