plotDispEsts

plotDispEsts,DEXSeqDataSet-method

object

the lower bound for points on the plot,
  points beyond this are drawn as triangles at ymin

ymin

the color for gene-wise dispersion
  estimates

genecol

fitcol

the color of the final estimates used for
  testing

finalcol

legend

xlab

ylab


A simple helper function that plots the per-gene dispersion
estimates together with the fitted mean-dispersion
relationship. Internally, it is a wrapper for the 
pltoDispEsts method from DESeq2.


The package is focused on finding differential exon usage
using RNA-seq exon counts between samples with different
experimental designs. It provides functions that allows the
user to make the necessary statistical tests based on a model
that uses the negative binomial distribution to estimate the
variance between biological replicates and generalized linear
models for testing. The package also provides functions for the
visualization and exploration of the results.

Alejandro Reyes

DEXSeq

Inference of differential exon usage in RNA-Seq

plotDispEsts function

A simple helper function that plots the per-gene dispersion
estimates together with the fitted mean-dispersion
relationship. Internally, it is a wrapper for the 
pltoDispEsts method from DESeq2.

plotDispEsts: Plot dispersion estimates

Description

Usage

Arguments