extractPLAF

Extract population level allele frequency (PLAF) from text file.

'DEploid' (Zhu et.al. 2018 <doi:10.1093/bioinformatics/btx530>)
is designed for deconvoluting mixed genomes with unknown
proportions. Traditional phasing programs are limited to diploid organisms.
Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo
(MCMC) approaches, and builds a generic framework that allows haloptype
searches in a multiple infection setting. This package provides R functions
to support data analysis and results interpretation.

Joe Zhu

DEploid.utils

'DEploid' Data Analysis and Results Interpretation

Jacob Almagro-Garcia

Gil McVean

University of Oxford 

Yinghan Liu

CodeCogs Zyba Ltd

Deepak Bandyopadhyay

Lutz Kettner

extractPLAF function

<dl><dt>plafFileName</dt>
<dd>Path of the PLAF text file.</dd></dl>

Arguments

Extract PLAF — extractPLAF

<dl>

<dt>plafFileName</dt>
<dd>Path of the PLAF text file.</dd>

</dl>

extractPLAF: Extract PLAF

Description

Usage

Value

Arguments

Examples