plotMembershipFunctions

An <code><a rd-options="Biobase:class.ExpressionSet" href="/link/ExpressionSet?package=DFP&version=1.30.0&to=Biobase%3Aclass.ExpressionSet" data-mini-rdoc="Biobase:class.ExpressionSet::ExpressionSet">ExpressionSet</a></code> object with <code><a rd-options="Biobase:class.AnnotatedDataFrame" href="/link/AnnotatedDataFrame?package=DFP&version=1.30.0&to=Biobase%3Aclass.AnnotatedDataFrame" data-mini-rdoc="Biobase:class.AnnotatedDataFrame::AnnotatedDataFrame">AnnotatedDataFrame</a></code> metadata.

rmadataset

 A list of 3 ExpressionLevel objects (&#145;Low&#146;, &#145;Medium&#146; and &#145;High&#146;) for each gene (a list of lists). 

genes

Each gene has 3 Membership Functions (&#145;Low&#146;, &#145;Medium&#146; and &#145;High&#146;) which can be plotted as curves in graphical mode.
 In the text mode a membership function is represented with its center and width.
 This function receives one or more gene names and plots the results in both graphical and text mode.
 If a set of genes containing more than 36 elements is provided, only the text mode is available.

manip

This package provides a supervised technique able to
identify differentially expressed genes, based on the
construction of \emph{Fuzzy Patterns} (FPs). The Fuzzy Patterns
are built by means of applying 3 Membership Functions to
discretized gene expression values.

Rodrigo AlvarezGlez

Gene Selection

plotMembershipFunctions function

An <code><a href="ExpressionSet" rd-options="Biobase:class.ExpressionSet">ExpressionSet</a></code> object with <code><a href="AnnotatedDataFrame" rd-options="Biobase:class.AnnotatedDataFrame">AnnotatedDataFrame</a></code> metadata.

A list of 3 ExpressionLevel objects (<sQuote>Low</sQuote>, <sQuote>Medium</sQuote> and <sQuote>High</sQuote>) for each gene (a list of lists).

Each gene has 3 Membership Functions (<sQuote>Low</sQuote>, <sQuote>Medium</sQuote> and <sQuote>High</sQuote>) which can be plotted as curves in graphical mode.In the text mode a membership function is represented with its center and width.This function receives one or more gene names and plots the results in both graphical and text mode.
 If a set of genes containing more than 36 elements is provided, only the text mode is available.

plotMembershipFunctions: Plots the Membership Functions (Low, Medium, High) used to discretize gene expression values

Description

Usage

Arguments

Value

References