showDiscreteValues

 A matrix with discrete labels for a set of genes (in rows) of several samples (in columns). 

genes

 [optional] A set of classes to which the samples belong. It must be one of the classes stored in the 
    phenoData of the original <code><a rd-options="Biobase:class.ExpressionSet" href="/link/ExpressionSet?package=DFP&version=1.30.0&to=Biobase%3Aclass.ExpressionSet" data-mini-rdoc="Biobase:class.ExpressionSet::ExpressionSet">ExpressionSet</a></code> object. 

classes


  In an intermediate step, the algorithm <code><a rd-options="DFP:discriminantFuzzyPattern" href="/link/discriminantFuzzyPattern?package=DFP&version=1.30.0&to=DFP%3AdiscriminantFuzzyPattern" data-mini-rdoc="DFP:discriminantFuzzyPattern::discriminantFuzzyPattern">discriminantFuzzyPattern</a></code> 
  converts the gene expression values into discrete labels (combining &#145;Low&#146;, &#145;Medium&#146; and &#145;High&#146;, 
  depending on the value of the param &#145;overlapping&#146;).
  This function permits printing these labels, specifying a set of genes (a vector) and/or classes of samples.


manip

This package provides a supervised technique able to
identify differentially expressed genes, based on the
construction of \emph{Fuzzy Patterns} (FPs). The Fuzzy Patterns
are built by means of applying 3 Membership Functions to
discretized gene expression values.

Rodrigo AlvarezGlez

Gene Selection

showDiscreteValues function

A matrix with discrete labels for a set of genes (in rows) of several samples (in columns).

[optional] A set of classes to which the samples belong. It must be one of the classes stored in the 
    phenoData of the original <code><a href="ExpressionSet" rd-options="Biobase:class.ExpressionSet">ExpressionSet</a></code> object.

In an intermediate step, the algorithm <code><a href="discriminantFuzzyPattern" rd-options="DFP:discriminantFuzzyPattern">discriminantFuzzyPattern</a></code> 
  converts the gene expression values into discrete labels (combining <sQuote>Low</sQuote>, <sQuote>Medium</sQuote> and <sQuote>High</sQuote>, 
  depending on the value of the param <sQuote>overlapping</sQuote>).This function permits printing these labels, specifying a set of genes (a vector) and/or classes of samples.

showDiscreteValues: Prints the labels to which the algorithm converts the gene expression values

Description

Usage

Arguments

Value

References