dim.DGEobj

<p>Returns the dimensions of the assay data (baseType)</p>


Provides a flexible container to manage and annotate Differential Gene
Expression (DGE) analysis results (Smythe et. al (2015) <doi:10.1093/nar/gkv007>).
The DGEobj has data slots for row (gene), col (samples), assays (matrix n-rows
by m-samples dimensions) and metadata (not keyed to row, col, or assays).
A set of accessory functions to deposit, query and retrieve subsets of a data
workflow has been provided.  Attributes are used to capture metadata such as
species and gene model, including reproducibility information such that a 3rd
party can access a DGEobj history to see how each data object was created or
modified.  Since the DGEobj is customizable and extensible it is not limited
to RNA-seq analysis types of workflows -- it can accommodate nearly any data
analysis workflow that starts from a matrix of assays (rows) by samples (columns).

Connie Brett

DGEobj

Differential Gene Expression (DGE) Analysis Results Data Object

John Thompson

Isaac Neuhaus

Ryan Thompson

dim.DGEobj function

Get the "assay" dimensions (row/genes by col/samples) — dim.DGEobj

Get the "assay" dimensions (row/genes by col/samples)

dim.DGEobj: Get the "assay" dimensions (row/genes by col/samples)

Description

Usage

Arguments

Value