plotResidualsAll

DEPRECATED, use plotResiduals with <code>form = ~.</code>, <code>~a + b</code>, <code>~x | group</code> or <code>~x | group %in% c(...)</code> instead

Uses a simulation-based approach to create readily
interpretable scaled (quantile) residuals for fitted generalized linear (mixed)
models. Currently supported are linear and generalized linear (mixed) models from
'lme4' (classes 'lmerMod', 'glmerMod'), 'glmmTMB', 'GLMMadaptive', 'spaMM', and 'brms'
(simple models); phylogenetic linear models from 'phylolm' (classes 'phylolm' and 'phyloglm');
generalized additive models ('gam' from 'mgcv'); 'glm' (including 'negbin' from 'MASS', but excluding
quasi-distributions) and 'lm' model classes. Moreover, externally created simulations,
e.g. posterior predictive simulations from Bayesian software such as 'JAGS', 'STAN',
or 'BUGS' can be processed as well. The resulting residuals are standardized to
values between 0 and 1 and can be interpreted as intuitively as residuals from a
linear regression. The package also provides a number of plot and test functions
for typical model misspecification problems, such as over/underdispersion, zero-inflation,
and residual spatial, temporal and phylogenetic autocorrelation.

Florian Hartig

DHARMa

Residual Diagnostics for Hierarchical (Multi-Level / Mixed)
Regression Models

Lukas Lohse

Melina de Souza Leite

Cosmina Werneke

plotResidualsAll function

<dl><dt>simulationOutput</dt>
<dd>an object with simulated residuals created by simulateResiduals.</dd>
<dt>predictorNames</dt>
<dd>names of the predictors / group levels to be plotted.</dd>
<dt>predictorType</dt>
<dd>whether multiple plots should be created based on different predictor variables (predictor) or a single predictor and each corresponding group level (groupLevel).</dd>
<dt>form</dt>
<dd>optional predictor (and grouping variable) against which the residuals should be plotted.</dd>
<dt>...</dt>
<dd>further options for plotResiduals.</dd></dl>

Arguments

Create multiple residual plots simultaneously (deprecated) — plotResidualsAll

<dl>

<dt>simulationOutput</dt>
<dd>an object with simulated residuals created by simulateResiduals.</dd>


<dt>predictorNames</dt>
<dd>names of the predictors / group levels to be plotted.</dd>


<dt>predictorType</dt>
<dd>whether multiple plots should be created based on different predictor variables (predictor) or a single predictor and each corresponding group level (groupLevel).</dd>


<dt>form</dt>
<dd>optional predictor (and grouping variable) against which the residuals should be plotted.</dd>


<dt>...</dt>
<dd>further options for plotResiduals.</dd>

</dl>

plotResidualsAll: Create multiple residual plots simultaneously (deprecated)

Description

Usage

Arguments