DImodelsVis (version 1.0.1)

add_interaction_terms: Add interaction terms used in a Diversity-Interactions (DI) model to new data

Description

Utility function that accepts a fitted Diversity-Interactions (DI) model object along with a data frame and adds the necessary interaction structures to the data for making predictions using the model object specified in `model`.

Usage

add_interaction_terms(data, model)

Value

The original data-frame with additional columns appended at the end describing the interactions terms present in the model object.

Arguments

data

A data-frame with species proportions that sum to 1 to create the appropriate interaction structures.

model

A Diversity Interactions model object fit using the DI() or autoDI() functions from the DImodels or DImulti() from the DImodelsMulti R packages.

Examples

library(DImodels)
data(sim1)

# Fit different DI models
mod1 <- DI(y = "response", prop = 3:6, data = sim1, DImodel = "AV")
mod2 <- DI(y = "response", prop = 3:6, data = sim1, DImodel = "FULL")
mod3 <- DI(y = "response", prop = 3:6, data = sim1, DImodel = "ADD")
mod4 <- DI(y = "response", prop = 3:6, data = sim1,
           FG = c("G", "G", "H", "H"), DImodel = "FG")

# Create new data for adding interaction terms
newdata <- sim1[sim1$block == 1, 3:6]
print(head(newdata))

add_interaction_terms(data = newdata, model = mod1)
add_interaction_terms(data = newdata, model = mod2)
add_interaction_terms(data = newdata, model = mod3)
add_interaction_terms(data = newdata, model = mod4)