DIscBIO (version 1.1.0)

FinalPreprocessing: Final Preprocessing

Description

This function generates the final filtered normalized dataset.

Usage

FinalPreprocessing(
  object,
  GeneFlitering = "NoiseF",
  export = FALSE,
  quiet = FALSE,
  fileName = "filteredDataset"
)
# S4 method for DISCBIO
FinalPreprocessing(
  object,
  GeneFlitering = "NoiseF",
  export = FALSE,
  quiet = FALSE,
  fileName = "filteredDataset"
)

Arguments

object

DISCBIO class object.

GeneFlitering

GeneFlitering has to be one of the followings: ["NoiseF","ExpF"]. Default is "NoiseF"

export

A logical vector that allows writing the final gene list in excel file. Default is TRUE.

quiet

if `TRUE`, intermediary output is suppressed

fileName

File name for exporting (if `export = TRUE`)

Value

The DISCBIO-class object input with the FinalGeneList slot filled.

Examples

# NOT RUN {
sc <- DISCBIO(valuesG1msTest)
sc <- NoiseFiltering(sc, percentile=0.9, CV=0.2, export=FALSE)
sc <- FinalPreprocessing(sc, GeneFlitering="NoiseF", export=FALSE)

# }