Pplot: A projection by projection plot of F/FMSY and B/BMSY

Description

A shorter version of the plot method for MSEs that just shows the projected trends in stock status and over exploitation

Usage

Pplot(MSEobj, YVar=c("B_BMSY", "F_FMSY"), MPs=NA, sims=NULL,  traj=c("all", "quant"), quants=c(0.1, 0.9), incquant=TRUE, quantcol="lightgray", RefYield=c("lto", "curr"), LastYr=TRUE,  maxMP=6, alpha=60, cex.axis=1.35,  cex.lab=1.4,  YLab=NULL, incMP=TRUE, MPcex=1.4, incLeg=TRUE, cex.leg=1.5,  legPos="topleft", yline=NULL, ...)

Arguments

MSEobj

An object of class MSE

YVar

What to plot on the y-axis? Options are: c("B_B0", "B_BMSY", "F_FMSY", "Yield")

MPs

Optional subset by MP

sims

Optional subset by simulation

traj

Plot all projections (all) or only quantiles (quant)

quants

Numeric vector of length 2 specifying the quantiles (e.g., 10th and 90th. Median is always included)

incquant

Logical. Include the quantiles or only plot median?

quantcol

Colour of the quantile polygon

RefYield

Should yield be relative to long-term optimum (lto) or last historical year (curr)

LastYr

Logical. Include the last historical year in the yield projections?

maxMP

Maximum number of MPs to plot

alpha

Alpha for transparency of lines

cex.axis

Size of axis text

cex.lab

Size of axis label

YLab

Optional label for y-axis

incMP

Logical. Include name of MP?

MPcex

Size of MP label

incLeg

Logical. Include a legend?

cex.leg

Size of legend text

legPos

Legend position

yline

Optional horizontal line

...

Additional arguments to be passed to plotting functions