DLMtool (version 4.4.1)

Jplot: Joint probability plot

Description

Calculates and plots the joint probability of meeting all performance metrics simultaneously

Usage

Jplot(MSEobj, PLim = 0.8, YVar = c('LTY', 'STY', 'avgSSB_SSB0',
'avgB_BMSY'), PMRefs = list(B_BMSY = 0.5, SSB_SSB0 = 0.2), UseMean = TRUE,
lastYrs = 10, AvailMPs = NULL, XLim = NULL, ShowCols = TRUE, ShowLabs =
FALSE, All = TRUE)

Arguments

MSEobj

An object of class MSE

PLim

Probability limit (acceptable risk threshold; e.g., 0.8 for 80 percent)

YVar

What to plot of the y-axis: choose from c('LTY', 'STY', 'avgSSB_SSB0', 'avgB_BMSY')

PMRefs

List containing the reference limits for each metric

UseMean

Logical. Calculate mean (TRUE) or median (FALSE)

lastYrs

Last number of years in projection period to calculate summary statistics

AvailMPs

Optional character vector of available MPs (plotted in a different colour)

XLim

Optional limits for the x-axis

ShowCols

Logical. Show the background colours?

ShowLabs

Logical. Show the MP labels?

All

Logical. Plot all MPs (TRUE) or only those above the probability limit (PLim))?

Value

Invisibly returns data frame containing statistics shown in the plot