
A <code>GRanges</code> object containing the annotation of the Arabidopsis thaliana


Uses Bisulfite sequencing data in two conditions and
identifies differentially methylated regions between the
conditions in CG and non-CG context. The input is the CX report
files produced by Bismark and the output is a list of DMRs
stored as GRanges objects.

Nicolae Radu Zabet

DMRcaller

Differentially Methylated Regions caller

GEs function

Format

The object was created by calling <code>import.gff3</code> function
from <code>rtracklayer</code> package for
<a href="/link/ftp%3A%2F%2Fftp.arabidopsis.org%2FMaps%2Fgbrowse_data%2FTAIR10%2FTAIR10_GFF3_genes_transposons.gff?package=DMRcaller&version=1.4.2" data-mini-rdoc="DMRcaller::ftp://ftp.arabidopsis.org/Maps/gbrowse_data/TAIR10/TAIR10_GFF3_genes_transposons.gff">ftp://ftp.arabidopsis.org/Maps/gbrowse_data/TAIR10/TAIR10_GFF3_genes_transposons.gff</a>

Source

A <code>GRanges</code> object containing the annotation of the Arabidopsis thaliana

GEs: The genetic elements data

Description

Arguments

Format

Source