covariate

Covariate data for 334 TCGA-COAD samples

datasets

Several tests for differential methylation in methylation array data, including one-sided differential mean and variance test. Methods used in the package refer to Dai, J, Wang, X, Chen, H and others (2021) "Incorporating increased variability in discovering cancer methylation markers", Biostatistics, submitted.

James Dai

DMtest

Differential Methylation Tests (DMtest)

Xiaoyu Wang

covariate function

An object of class <code>"matrix"</code> with with 334 rows and 3 vaiables.<dl class="dl-horizontal">
 <dt>group</dt><dd>Whether the sample is normal or tumor, normal:0, tumor:1</dd>
 <dt>gender</dt><dd>Female or Male</dd>
 <dt>age</dt><dd>age (31--90)</dd>
</dl>

Format

Example covariate data for dmvc function — covariate

An object of class <code>"matrix"</code> with with 334 rows and 3 vaiables.<dl class='dl-horizontal'>
 <dt>group</dt><dd>Whether the sample is normal or tumor, normal:0, tumor:1</dd>
 <dt>gender</dt><dd>Female or Male</dd>
 <dt>age</dt><dd>age (31--90)</dd>
</dl>

covariate: Example covariate data for dmvc function

Description

Usage

Arguments

Format

Examples