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DNAcopy (version 1.46.0)
DNA copy number data analysis
Description
Implements the circular binary segmentation (CBS) algorithm to segment DNA copy number data and identify genomic regions with abnormal copy number.
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Version
1.46.0
1.44.0
1.42.0
1.40.0
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Version
1.46.0
License
GPL (>= 2)
Maintainer
Venkatraman E Seshan
Last Published
January 1st, 1970
Functions in DNAcopy (1.46.0)
Search functions
coriell
Array CGH data set of Coriell cell lines
plot.DNAcopy
Plot the data and results from segment of a CNA object
segments.p
p-values for the change-points
getbdry
Sequential stopping boundary
smooth.CNA
Smooth a `Copy Number Array' data object
exon.segment
Binary segmentation of exon data.
subset.DNAcopy
Subset a DNAcopy data object
DNAcopy
Results of segmenting a CNA data object
segment
Genome Segmentation Program
segments.summary
Additional summary measured for the segments
CNA
Create `Copy Number Array' data object
subset.CNA
Subset a `Copy Number Array' data object
glFrequency
Additional summary measured for the segments
DNAcopy-internal
Internal DNAcopy functions
zoomIntoRegion
Zoomed in view of genomic region
plotSample
Plot the data and results from segmentation for a single sample
cytoBand
Cytogenic band data