DNAcopy v1.46.0

DNA copy number data analysis

Implements the circular binary segmentation (CBS) algorithm to segment DNA copy number data and identify genomic regions with abnormal copy number.

Functions in DNAcopy

Name Description
coriell Array CGH data set of Coriell cell lines
plot.DNAcopy Plot the data and results from segment of a CNA object
segments.p p-values for the change-points
getbdry Sequential stopping boundary
smooth.CNA Smooth a `Copy Number Array' data object
exon.segment Binary segmentation of exon data.
subset.DNAcopy Subset a DNAcopy data object
DNAcopy Results of segmenting a CNA data object
segment Genome Segmentation Program
segments.summary Additional summary measured for the segments
CNA Create `Copy Number Array' data object
subset.CNA Subset a `Copy Number Array' data object
glFrequency Additional summary measured for the segments
DNAcopy-internal Internal DNAcopy functions
zoomIntoRegion Zoomed in view of genomic region
plotSample Plot the data and results from segmentation for a single sample
cytoBand Cytogenic band data
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Details

LazyData yes
License GPL (>= 2)
biocViews Microarray, CopyNumberVariation

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