getFasta
and
getShape
. Shape predictions can be additionally plotted with plotShape
.
See package vignette for examples.
T.-P. Chiu*, F. Comoglio*, T. Zhou, L. Yang, R. Paro, and R. Rohs: DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding (2016). Bioinformatics http://bioinformatics.oxfordjournals.org/content/early/2016/01/09/bioinformatics.btv735 (*equal contributor in alphabetic order)